How to read this atlas
This file is the relationship map, not the whole house. The index gives a clean reading path; the graph shows how older keys, restorations, methods, and current artifacts inherit from one another.
Use this as an atlas of the corpus. Z51 remains the portal, individual pages remain the artifacts, and this page explains why unlike works belong in the same system.
Portal: orient
Atlas: relate
Artifact: preserve
Botanical Primitives & Identification Keys
Florilegium Caricis · North America
DOI: 10.5281/zenodo.19138828 · 2026
Character matrix for 466 North American Carex taxa. Zero-dependency HTML restoration of FNA Volume 23.
Digital ParatypeČысты Methodology466 taxa
Scleria of North America
DOI: 10.5281/zenodo.19228596 · 2026
Interactive taxonomic identification key for the genus Scleria. Zero-dependency HTML primitive.
Digital Paratype
Scirpus of North America
2026
Identification key for the genus Scirpus. Primitive architecture focused on field-ready diagnostic character matrices.
Eriophorum — Cotton Grass
TJID3 Research · 2026
Cyperaceae primitive wired to Carex, Scleria, and Scirpus in the atlas.
CyperaceaeEriophorumCotton Grass
Comprehensive Botanical Glossary
TJID3 Research · 2026
Fast, searchable field and teaching reference for plant morphology, taxonomy, and herbarium language. Compiled from Wikipedia, MOBOT, Montana NHP, Go Botany, vPlants, Kew Plant Glossary, and PlantNet NSW. Links to all botanical primitives in the corpus and to the Čysty methodology.
Botanical GlossaryReferenceTaxonomy
Historical Physics Restorations
Companion to Boltzmann (1872)
DOI: 10.5281/zenodo.18988588 · 2025
Interactive reconstruction of the H-Theorem and Kinetic Theory. Six-model evolution chain. Multilingual editions with integrated equation glossaries.
Čысты6 models6 languages
Boltzmann Model Run Nodes
ChatGPT · Claude · DeepSeek · Gemini · Kimi · Manus · Ollama
Expanded Boltzmann restoration lineage. Every model-run node is tethered to the Boltzmann companion, with local chains inside each model family.
ChatGPT e1/e2Claude a1-a4DeepSeek b1-b6Gemini c1/c2Kimi d1/d2Manus g1OllamaGerman d1
Companion to Einstein (1905)
DOI: 10.5281/zenodo.18797373 · 2024
Brownian Motion reconstruction from German OCR source material. Mendelian lineage: P→F1→F2→F3→F4, with eight language editions and synchronized glossaries.
ČыстыMendelian8 languages
Companion to Maxwell (1860)
2025
On the Dynamical Theory of Gases. Discovered cross-linked from the Einstein Companion.
Archival ReconstructionNEW
Linguistics · Economics · Geologic Time
Tabula: A Constructed Global Pidgin
DOI: 10.5281/zenodo.19039226 · 2025
Phonemically stable auxiliary language synthesized from 50 source languages. ~20% compression on English canonical texts.
Constructed Language50 sources
Tabula — Language Training Aids
TJID3 Research · companion language nodes
Source-language training aids associated with Tabula. Kept as a compact ring in the atlas so the language layer expands without dominating the main index.
Michigan Cannabis Market Analysis
DOI: 10.5281/zenodo.18065297 · 2024
Longitudinal study over 8 years documenting 89% price decline and regulatory arbitrage mechanisms in the Michigan cannabis market.
Longitudinal89% decline
Digital Paratypes
DOI pending metadata confirmation · 2025
The 20-Year File. A practical architecture for publishing datasets and visualizations as single, durable HTML artifacts that run offline.
20-Year FileZero-dependency
Tech — Digital Paratypes / 20-Year File
TJID3 Research · applied primitive architecture
Technology node connected to the Cannabis work and the tool-shop layer.
TechCannabis EdgePrimitive Architecture
TJID3 Tool Shop
CSS minifier · debloater · JSON · logos · minify · sitemap
In-house utilities now represented as individual graph nodes and wired to the development-tools node.
on3
TJID3 Research · 2026
Informatics artifact wired to the Čысты methodology, in-house development tools, and the Carex taxonomy core.
InformaticsČыстыCarex
Baseball
Baseball — ball11.58
TJID3 Research · 2026
A baseball reference artifact. The most unexpected node in the corpus. Wired directly to the Čысты methodology — because every good corpus needs at least one left-field connection.
BaseballOutlierČысты
Medical / Tropical Medicine
Stop Malaria — A Complete Scientific Reference
TJID3 Research · 2026
Burden, lifecycle, genomics, treatment protocols, resistance landscape, and a postulated integrated path to eradication. Single-session agentic workflow, ground-truthed against primary literature.
PrototypeMalariaTropical Medicine
Dengue Fever: A Comprehensive Scientific Reference
TJID3 Research · 2025
DENV taxonomy, serotypes, genome architecture, vectors, clinical management, ADE, vaccine status, antiviral pipeline, Wolbachia control, and elimination strategy.
DengueDENVVector-borne
Medical Companion Artifacts
Malaria — Lifecycle Companion
TJID3 Research · 2026 · companion node
Stepwise malaria transmission and lifecycle artifact paired with a compact visual plate.
Chagas — Lifecycle Companion
TJID3 Research · 2026 · companion node
Stepwise T. cruzi / triatomine / reservoir ecology artifact paired with a compact visual plate.
Dengue — Lifecycle Companion
TJID3 Research · 2026 · companion node
Stepwise DENV / Aedes / urban transmission artifact paired with a compact visual plate.
West Nile — Lifecycle Companion
TJID3 Research · 2026 · companion node
Stepwise WNV / avian reservoir / Culex transmission artifact paired with a compact visual plate.
Yellow Fever — Lifecycle Companion
TJID3 Research · 2026 · companion node
Stepwise yellow fever cycle artifact for sylvatic and urban transmission, paired with a compact visual plate.
Published Works
Why is the lawn buzzing? (BDJ)
DOI: 10.3897/BDJ.2.e1101 · 2014
Visual evidence for insect pollination of a grass. Challenges wind-pollination orthodoxy in graminoids.
BDJPoaceae
Web-based Computational Tools for Studying Plant Biodiversity — PhD Dissertation
etd-01212015-094504 · 2015
Large-scale plant biodiversity bioinformatics. Derivative works for identification. LSU.
LSUBioinformatics
Prior Keys — Lucid Platform
Prior Keys — Visual