Durable research objects, taxonomic tools, voucher systems, phylogenetics, protein visualization, restorations, methods, and prototypes, built as zero-dependency HTML primitives. This page is the front door, the map, and the maintained shelf.
Nothing on the shelf matches . Try a genus, a family, a method, or a year.
The Atlas maps TJID3 Research through its connected artifacts, methods, lineages, and recurring ideas. Every node opens a real page, not a bookmark.
The frame runs live. Drag a node and the cloud rebalances through a hand-rolled Coulomb-Hooke force simulation. No libraries. No build step. Start here to see the shape of the whole corpus before opening individual files. The Atlas is a single file with zero dependencies, no APIs, and no CDNs. A true primitive.
Artifacts are the objects: one file, one job, one destination. Each path below leads to a full shelf.
Prototypes stay visible without swallowing the main shelf. Older foundations stay folded at the end, not buried.
Objects that explain the range: botany, physics, method, language, and source restoration.
Zero-dependency character matrix for 466 North American Carex taxa, derived from FNA Volume 23.
Interactive companion to Boltzmann's H-theorem and kinetic theory, with glossaries and multilingual layers.
Interactive companion to Einstein's Brownian motion paper, separated from the primary-source reconstruction.
A field-first argument for capturing voucher data once, at the specimen, and carrying it forward without a second transcription session.
Phonemically stable auxiliary language synthesized from 50 source languages, with compression tests on canonical texts.
The taxonomic and applied plant work, kept as direct destinations.
466 North American Carex taxa in a field-ready character matrix.
The Broken ChainThe paper behind the Carex workflow: capture once in the field, preserve ownership, and remove the second transcription session.
Single-Taxon Field VoucherOne-taxon field capture with determination data, specimen metadata, exports, labels, and QR continuity.
Regulated Pest ExplorerZero-dependency key for North American regulated pests.
Glossary of Botanical TermsPrimitive glossary to botanical jargon.
U.S. Noxious Weeds · All Taxa IndexAPHIS and state-listing index: 458 taxa, 1,064 state listings, live search, habitat ontology.
Sequence comparison, whole-genome trees, and protein structure behavior, kept together because this is where the numbers turn back into organisms.
A whole-genome tree builder for small things: viruses, bacteria, viroids, plastids, and other compact genomes.
Protein TheaterBrowser-native protein comparison and molecular theater for structure, fit, charge, attraction, and repulsion.
Standard Sequence AlignmentA direct browser tool for standard sequence alignment and side-by-side comparison.
Primary-source reconstructions and companions, separated so readers know whether they are entering a text, a guide, or both.
H-theorem companion with reader guidance and glossary layers.
Boltzmann (1872) · Thermal Equilibrium of Gas MoleculesRestored source layer for the original kinetic theory text.
Companion to Einstein 1905Reader-facing explanation of the 1905 Brownian motion paper.
Einstein (1905) · Hybrid Primary Source ReconstructionPrimary source reconstruction with multilingual and mathematical support.
The architecture explains itself here: primitives, compression, market analysis, and scale.
Durable HTML publishing argument, offline and rot-resistant.
Tabula: A Constructed Global PidginPhonemic compression experiment across 50 source languages.
Seeing Geologic TimeA geologic-scale page built to make time legible in-browser.
Michigan Cannabis Market AnalysisLongitudinal market study and applied data artifact.
Medical references and companion plates, grouped as a suite so the reader sees the pattern before the individual doors.
Malaria burden, lifecycle, genomics, treatment, resistance, and eradication logic.
DENV 1-4, vector biology, ADE shock mechanism, and epidemic surge context.
Trypanosoma cruzi, Triatominae vectors, latency, DTUs, and oral transmission outbreaks.
YFV structure, 17D vaccine, toxic phase, sylvatic reservoir, and preventable mortality.
WNV, Culex vectors, neuroinvasive disease, H249P virulence, and One Health surveillance.
Chagas, dengue, malaria, West Nile, yellow fever, TB, measles, pertussis, typhus, and cholera.
Agricultural keys and state-linked pest tools, kept compact so the page does not turn into a warehouse aisle.
Mobile identification system for pests, weeds, and applied pathways.
V1 artifact for Poaceae pest and disease taxa.
Fabaceae Pests and DiseasesV1 artifact for Fabaceae pest and disease taxa.
Solanaceae Pests and DiseasesV1 artifact for Solanaceae pest and disease taxa.
Vitaceae Pests and DiseasesV1 artifact for Vitaceae pest and disease taxa.
Rutaceae Pests and DiseasesV1 artifact for Rutaceae pest and disease taxa.
Prunus Pests and DiseasesV1 artifact for Prunus pest and disease taxa.
Interactive Pests derived from APHIS / USDASelectable by U.S. state.
First MapsV1 distribution maps for pest taxa.
Pest and Host VoucherPaired capture for a pest and its host, with shared locality and linked voucher records.
The game is a data system. It belongs in the corpus. One artifact, one destination, more to follow.
Zero-dependency baseball data artifact. The game is fundamentally a data system: discrete events, deep historical records, and verifiable outcomes. It fits here exactly.
Earlier biodiversity informatics and teaching tools, retained because the later primitives did not fall from the sky.